EVA: Detailed information for proteins added on: 2002_03_20

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_03_20	1kqf	C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, MAJOR SUBUNIT; CHAIN: A; SYNONYM: FORMATE DEHYDROGENASE-N ALPHA SUBUNIT; FDH-N ALPHA SUBUNIT; ANAEROBIC FORMATE DEHYDROGENASE MAJOR SUBUNIT; EC: 1.2.1.2; OTHER_DETAILS: NATIVE (OXIDIZED) STRUCTURE; MOLECULE: FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, IRON- SULFUR SUBUNIT; CHAIN: B; SYNONYM: FORMATE DEHYDROGENASE-N BETA SUBUNIT; FDH-N BETA SUBUNIT; ANAEROBIC FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT; EC: 1.2.1.2; OTHER_DETAILS: NATIVE (OXIDIZED) STRUCTURE; MOLECULE: FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, CYTOCHROME B556(FDN) SUBUNIT; CHAIN: C; SYNONYM: FORMATE DEHYDROGENASE-N GAMMA SUBUNIT; FDH-N GAMMA SUBUNIT; ANAEROBIC FORMATE DEHYDROGENASE CYTOCHROME B556 SUBUNIT; EC: 1.2.1.2; OTHER_DETAILS: NATIVE (OXIDIZED) STRUCTURE	ESCHERICHIA COLI; BACTERIA; STRAIN: GL101; ESCHERICHIA COLI; BACTERIA; STRAIN: GL101; ESCHERICHIA COLI; BACTERIA; STRAIN: GL101	M.JORMAKKA,S.TORNROTH,B.BYRNE,S.IWATA
2002_03_20	1kzy	C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN, PROTEIN BINDING	MOLECULE: CELLULAR TUMOR ANTIGEN P53; CHAIN: A, B; FRAGMENT: DNA-BINDING CORE DOMAIN; ENGINEERED: YES; MOLECULE: TUMOR SUPPRESSOR P53-BINDING PROTEIN 1; CHAIN: C, D; FRAGMENT: TANDEM-BRCT DOMAIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: TP53; HOMO SAPIENS; HUMAN; GENE: 53BP1;	W.S.JOO,P.D.JEFFREY,S.B.CANTOR,M.S.FINNIN,D.M.LIVINGSTON, N.P.PAVLETICH
2002_03_20	1kqf	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, MAJOR SUBUNIT; CHAIN: A; SYNONYM: FORMATE DEHYDROGENASE-N ALPHA SUBUNIT; FDH-N ALPHA SUBUNIT; ANAEROBIC FORMATE DEHYDROGENASE MAJOR SUBUNIT; EC: 1.2.1.2; OTHER_DETAILS: NATIVE (OXIDIZED) STRUCTURE; MOLECULE: FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, IRON- SULFUR SUBUNIT; CHAIN: B; SYNONYM: FORMATE DEHYDROGENASE-N BETA SUBUNIT; FDH-N BETA SUBUNIT; ANAEROBIC FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT; EC: 1.2.1.2; OTHER_DETAILS: NATIVE (OXIDIZED) STRUCTURE; MOLECULE: FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, CYTOCHROME B556(FDN) SUBUNIT; CHAIN: C; SYNONYM: FORMATE DEHYDROGENASE-N GAMMA SUBUNIT; FDH-N GAMMA SUBUNIT; ANAEROBIC FORMATE DEHYDROGENASE CYTOCHROME B556 SUBUNIT; EC: 1.2.1.2; OTHER_DETAILS: NATIVE (OXIDIZED) STRUCTURE	ESCHERICHIA COLI; BACTERIA; STRAIN: GL101; ESCHERICHIA COLI; BACTERIA; STRAIN: GL101; ESCHERICHIA COLI; BACTERIA; STRAIN: GL101	M.JORMAKKA,S.TORNROTH,B.BYRNE,S.IWATA
2002_03_20	1kvv	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RNA BINDING PROTEIN	MOLECULE: SRP19; CHAIN: A; SYNONYM: SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN; ENGINEERED: YES; MUTATION: YES	ARCHAEOGLOBUS FULGIDUS; ARCHAEA; GENE: AF1258;	O.N.PAKHOMOVA,S.DEEP,Q.HUANG,C.ZWIEB,A.P.HINCK
2002_03_20	1kj6	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIBIOTIC	MOLECULE: BETA-DEFENSIN 3; CHAIN: A; SYNONYM: BD-3, HBD-3; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	D.J.SCHIBLI,H.N.HUNTER,V.ASEYEV,T.D.STARNER,J.M.WIENCEK, P.B.MCCRAY JR.,B.F.TACK,H.J.VOGEL
2002_03_20	1ktb	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: ALPHA-N-ACETYLGALACTOSAMINIDASE; CHAIN: A; EC: 3.2.1.49; ENGINEERED: YES	GALLUS GALLUS; CHICKEN; GENE: ALPHA-NAGA;	S.C.GARMAN,L.HANNICK,A.ZHU,D.N.GARBOCZI
2002_03_20	1j8c	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS	MOLECULE: UBIQUITIN-LIKE PROTEIN HPLIC-2; CHAIN: A; FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 1-103); ENGINEERED: YES	HOMO SAPIENS; HUMAN;	K.J.WALTERS,M.F.KLEIJNEN,A.M.GOH,G.WAGNER,P.M.HOWLEY
2002_03_20	1k8h	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RNA BINDING PROTEIN	MOLECULE: SMALL PROTEIN B; CHAIN: A; SYNONYM: SSRA-BINDING PROTEIN; ENGINEERED: YES	AQUIFEX AEOLICUS; BACTERIA;	G.DONG,D.W.HOFFMAN
2002_03_20	1gk7	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIMENTIN	MOLECULE: VIMENTIN; CHAIN: A; FRAGMENT: FRAGMENT 1A (RESIDUES 102-138); ENGINEERED: YES; OTHER_DETAILS: TWO EXTRA RESIDUES, GS, AT THE N-TERMINUS ARE RESULT OF THE CLONING PROCEDURE	HOMO SAPIENS; HUMAN;	S.V.STRELKOV,H.HERRMANN,N.GEISLER,R.ZIMBELMANN,U.AEBI, P.BURKHARD

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field