Home   -  Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Bottom Explain scores

EVA sec results for: yaspin

Organisation of method specific results

METHOD about: ../../doc/explain_methods.html#PX_about_yaspin
METHOD url: yaspin
METHOD quote:
TYPE : sec
NPROT : 157
AVE_Q3 : 73.6
AVE_SOV: 72.9
NOTE 1 : here ALL results obtained for yaspin are given, i.e. NOT those for a common subset!
NOTE 2 : all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins
type date sots id Q3 Q3H%o Q3H%p Q3E%o Q3E%p Q3L%o Q3L%p sov sovH sovE sovL BAD info infoO infoP corrH corrE corrL class contDH contDE

Averages over each month
TypeMethodMonthNprotAverage Q3 for monthFile with details for month
secyaspinALL 157 73.6  
secyaspin2004_01 7 70.7 old/2004_01_yaspin.html
secyaspin2004_02 19 60.9 old/2004_02_yaspin.html
secyaspin2004_03 13 71.0 old/2004_03_yaspin.html
secyaspin2004_04 11 77.8 old/2004_04_yaspin.html
secyaspin2004_05 6 62.1 old/2004_05_yaspin.html
secyaspin2004_06 7 78.9 old/2004_06_yaspin.html
secyaspin2004_07 6 76.3 old/2004_07_yaspin.html
secyaspin2004_08 4 91.6 old/2004_08_yaspin.html
secyaspin2004_10 10 79.0 old/2004_10_yaspin.html
secyaspin2004_11 7 63.6 old/2004_11_yaspin.html
secyaspin2004_12 1 75.3 old/2004_12_yaspin.html
secyaspin2005_02 1 59.7 old/2005_02_yaspin.html
secyaspin2005_03 18 75.6 old/2005_03_yaspin.html
secyaspin2005_04 11 74.6 old/2005_04_yaspin.html
secyaspin2005_05 12 80.2 old/2005_05_yaspin.html
secyaspin2005_06 4 77.9 old/2005_06_yaspin.html
secyaspin2005_07 14 74.6 old/2005_07_yaspin.html
secyaspin2005_08 17 76.0 old/2005_08_yaspin.html
secyaspin2005_09 3 77.5 old/2005_09_yaspin.html
secyaspin2006_03 3 81.0 old/2006_03_yaspin.html
secyaspinALL 157 73.6  

Notations used (detailed explanation)

psum  percentage over all proteins
sig  standard deviation
errsig significant difference (to distinguish between two methods)
type   prediction type
date   date when added [yyyy_mm_dd]
sots   standard of truth
id   identifier of protein
Q3   three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o   correctly predicted helix residues (percentage of helix observed)
Q3H%p   correctly predicted helix residues (percentage of helix predicted)
Q3E%o   correctly predicted strand residues (percentage of helix observed)
Q3E%p   correctly predicted strand residues (percentage of helix predicted)
Q3L%o   correctly predicted loop residues (percentage of helix observed)
Q3L%p   correctly predicted loop residues (percentage of helix predicted)
sov   per segment accuracy (three states)
sovH   per segment accuracy for helix residues
sovE   per segment accuracy for strand residues
sovL   per segment accuracy for non-regular residues
BAD   percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO   information index accuracy (percentage of observed)
infoP   information index accuracy (percentage of predicted)
corrH   Matthews correlation index for helix
corrE   Matthews correlation index for strand
corrL   Matthews correlation index for loop
var   variance over all proteins (1/N-1)*( score(i) - )**2
sig   sigma (standard deviation) over all proteins (sqrt[var])
errsig   significant differences ( standard dev / sqrt(Nprot) )
Explain scores - Home   -   Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Top