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EVA sec results for: SAM-T99sec

Organisation of method specific results

 
 
METHOD about: ../../doc/explain_methods.html#PX_about_samt99_sec
METHOD url: SAM-T99sec
METHOD quote: K Karplus, C Barrett, and R Hughey:: Hidden Markov Models for Detecting Remote Protein Homologies, Bioinformatics, 14, 846-856, 1998
TYPE : sec
NPROT : 204
NWEEKS : 63
AVE_Q3 : 77.3
AVE_SOV: 74.9
NOTE 1 : here ALL results obtained for samt99_sec are given, i.e. NOT those for a common subset!
NOTE 2 : all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!



Averages over all proteins
type date sots id Q3 Q3H%o Q3H%p Q3E%o Q3E%p Q3L%o Q3L%p sov sovH sovE sovL BAD info infoO infoP corrH corrE corrL class contDH contDE
sec2007_03_21dssppsum77.386806374747474.882.974.668.83.00.380.380.370.710.620.588431.37.36.9
sec2007_03_21dsspsig10.633314249181715.021.527.919.55.10.170.180.180.240.290.208367.67.07.8
sec2007_03_21dssperrsig0.742223111.01.51.91.30.350.010.010.010.010.020.01585.80.490.54
                         




Averages over each month
TypeMethodMonthNprotAverage Q3 for monthFile with details for month
secsamt99_secALL 204 77.3  
secsamt99_sec2001_04 1 78.2 old/2001_04_samt99_sec.html
secsamt99_sec2003_07 5 81.8 old/2003_07_samt99_sec.html
secsamt99_sec2003_08 5 78.0 old/2003_08_samt99_sec.html
secsamt99_sec2003_11 22 76.1 old/2003_11_samt99_sec.html
secsamt99_sec2003_12 18 79.8 old/2003_12_samt99_sec.html
secsamt99_sec2004_01 12 74.7 old/2004_01_samt99_sec.html
secsamt99_sec2004_02 19 76.1 old/2004_02_samt99_sec.html
secsamt99_sec2004_03 13 77.7 old/2004_03_samt99_sec.html
secsamt99_sec2004_04 11 82.3 old/2004_04_samt99_sec.html
secsamt99_sec2004_05 6 77.9 old/2004_05_samt99_sec.html
secsamt99_sec2004_06 7 77.9 old/2004_06_samt99_sec.html
secsamt99_sec2004_07 10 79.2 old/2004_07_samt99_sec.html
secsamt99_sec2004_08 16 81.3 old/2004_08_samt99_sec.html
secsamt99_sec2004_09 12 76.4 old/2004_09_samt99_sec.html
secsamt99_sec2004_10 10 78.5 old/2004_10_samt99_sec.html
secsamt99_sec2004_11 6 71.7 old/2004_11_samt99_sec.html
secsamt99_sec2004_12 1 69.7 old/2004_12_samt99_sec.html
secsamt99_sec2005_02 1 53.2 old/2005_02_samt99_sec.html
secsamt99_sec2005_03 18 78.6 old/2005_03_samt99_sec.html
secsamt99_sec2005_04 3 67.0 old/2005_04_samt99_sec.html
secsamt99_sec2005_05 7 71.1 old/2005_05_samt99_sec.html
secsamt99_sec2005_06 4 78.4 old/2005_06_samt99_sec.html
secsamt99_sec2005_07 14 76.4 old/2005_07_samt99_sec.html
secsamt99_sec2005_08 3 70.8 old/2005_08_samt99_sec.html
secsamt99_secALL 204 77.3  




Notations used (detailed explanation)

psum  percentage over all proteins
sig  standard deviation
errsig significant difference (to distinguish between two methods)
type   prediction type
date   date when added [yyyy_mm_dd]
sots   standard of truth
id   identifier of protein
Q3   three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o   correctly predicted helix residues (percentage of helix observed)
Q3H%p   correctly predicted helix residues (percentage of helix predicted)
Q3E%o   correctly predicted strand residues (percentage of helix observed)
Q3E%p   correctly predicted strand residues (percentage of helix predicted)
Q3L%o   correctly predicted loop residues (percentage of helix observed)
Q3L%p   correctly predicted loop residues (percentage of helix predicted)
sov   per segment accuracy (three states)
sovH   per segment accuracy for helix residues
sovE   per segment accuracy for strand residues
sovL   per segment accuracy for non-regular residues
BAD   percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO   information index accuracy (percentage of observed)
infoP   information index accuracy (percentage of predicted)
corrH   Matthews correlation index for helix
corrE   Matthews correlation index for strand
corrL   Matthews correlation index for loop
var   variance over all proteins (1/N-1)*( score(i) - )**2
sig   sigma (standard deviation) over all proteins (sqrt[var])
errsig   significant differences ( standard dev / sqrt(Nprot) )
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