| METHOD about: | ../../../doc/explain_methods.html#PX_about_psipred |
| METHOD url: | PSIpred |
| TYPE : | sec |
| NPROT : | 224 |
| NWEEKS : | 68 |
| NOTE 1 : | here ALL results obtained for PSIpred in month 2005_02 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2005_02 | dssp | ALL_proteins:psum | 77.8 | 86 | 82 | 66 | 74 | 75 | 75 | 75.3 | 81.1 | 72.5 | 70.3 | 2.5 | 0.38 | 0.37 | 0.38 | 0.71 | 0.64 | 0.59 | 8616.0 | 7.9 | 5.5 |
| sec | 2005_02 | dssp | ALL_proteins:sig | 11.3 | 35 | 33 | 46 | 51 | 15 | 14 | 16.4 | 23.3 | 32.6 | 18.2 | 4.5 | 0.18 | 0.19 | 0.19 | 0.22 | 0.29 | 0.20 | 8549.0 | 9.1 | 7.4 |
| sec | 2005_02 | dssp | ALL_proteins:errsig | 0.75 | 2 | 2 | 3 | 3 | 1 | 0.98 | 1.1 | 1.5 | 2.1 | 1.2 | 0.30 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 571.2 | 0.60 | 0.49 |
| sec | 2005_02 | dssp | THIS_month:psum | 59.7 | 75 | 42 | 55 | 91 | 58 | 38 | 67 | 75 | 68 | 53 | 14.5 | 0.18 | 0.2 | 0.17 | 0.42 | 0.47 | 0.31 | 0 | 14 | 24 |
| sec | 2005_02 | dssp | 1ycy:A | 59.7 | 75 | 42 | 55 | 91 | 58 | 38 | 67.0 | 75 | 68 | 53 | 14.5 | 0.18 | 0.20 | 0.17 | 0.42 | 0.47 | 0.31 | 0.0 | 14.0 | 24.0 |
| sec | 2005_02 | dssp | THIS_month:psum | 59.7 | 75 | 42 | 55 | 91 | 58 | 38 | 67 | 75 | 68 | 53 | 14.5 | 0.18 | 0.2 | 0.17 | 0.42 | 0.47 | 0.31 | 0 | 14 | 24 |
| sec | 2005_02 | dssp | ALL_proteins:psum | 77.8 | 86 | 82 | 66 | 74 | 75 | 75 | 75.3 | 81.1 | 72.5 | 70.3 | 2.5 | 0.38 | 0.37 | 0.38 | 0.71 | 0.64 | 0.59 | 8616.0 | 7.9 | 5.5 |
| sec | 2005_02 | dssp | ALL_proteins:sig | 11.3 | 35 | 33 | 46 | 51 | 15 | 14 | 16.4 | 23.3 | 32.6 | 18.2 | 4.5 | 0.18 | 0.19 | 0.19 | 0.22 | 0.29 | 0.20 | 8549.0 | 9.1 | 7.4 |
| sec | 2005_02 | dssp | ALL_proteins:errsig | 0.75 | 2 | 2 | 3 | 3 | 1 | 0.98 | 1.1 | 1.5 | 2.1 | 1.2 | 0.30 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 571.2 | 0.60 | 0.49 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |