Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Bottom Explain scores

EVA sec results for: SCRATCH (SSpro3) month: 2003_07

METHOD about:	../../../doc/explain_methods.html#PX_about_scratch
METHOD url:	SCRATCH (SSpro3)
TYPE :	sec
NPROT :	207
NWEEKS :	64
NOTE 1 :	here ALL results obtained for SCRATCH (SSpro3) in month 2003_07 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2003_07 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2003_07	dssp	ALL_proteins:psum	76.1	82	81	60	70	75	72	71.6	78.9	73.3	69.0	3.6	0.35	0.35	0.35	0.68	0.58	0.57	8164.2	7.9	6.8
sec	2003_07	dssp	ALL_proteins:sig	11.2	33	32	41	47	15	16	15.8	22.9	29.2	17.4	6.5	0.16	0.17	0.17	0.23	0.32	0.20	8102.2	8.5	9.0
sec	2003_07	dssp	ALL_proteins:errsig	0.78	2	2	2	3	1	1	1.1	1.5	2.0	1.2	0.45	0.01	0.01	0.01	0.01	0.02	0.01	563.1	0.59	0.62
sec	2003_07	dssp	THIS_month:psum	82.9	89	87	52	56	76	84	77.2	86	80	71	1.2	0.49	0.48	0.50	0.80	0.71	0.67	100	4	2

sec	2003_07	dssp	1hk9:A	81.2	76	90	86	78	76	80	81.2	76	82	82	4.6	0.48	0.47	0.49	0.79	0.65	0.67	100.0	3.0	4.0
sec	2003_07	dssp	1m12:A	85.7	98	82	0	0	64	95	85.5	92	100	74	0.0	0.43	0.40	0.47	0.69	1.0	0.69	100.0	11.0	0.00
sec	2003_07	dssp	1nsl:A	80.0	100	92	50	57	80	80	67.3	100	62	55	0.0	0.55	0.56	0.56	0.94	0.42	0.60	100.0	2.0	2.0
sec	2003_07	dssp	1p5h:A	84.8	84	86	73	89	87	82	75.1	76	76	73	0.4	0.50	0.49	0.51	0.76	0.78	0.70	100.0	0.00	2.0

sec	2003_07	dssp	THIS_month:psum	82.9	89	87	52	56	76	84	77.2	86	80	71	1.2	0.49	0.48	0.50	0.80	0.71	0.67	100	4	2

sec	2003_07	dssp	ALL_proteins:psum	76.1	82	81	60	70	75	72	71.6	78.9	73.3	69.0	3.6	0.35	0.35	0.35	0.68	0.58	0.57	8164.2	7.9	6.8
sec	2003_07	dssp	ALL_proteins:sig	11.2	33	32	41	47	15	16	15.8	22.9	29.2	17.4	6.5	0.16	0.17	0.17	0.23	0.32	0.20	8102.2	8.5	9.0
sec	2003_07	dssp	ALL_proteins:errsig	0.78	2	2	2	3	1	1	1.1	1.5	2.0	1.2	0.45	0.01	0.01	0.01	0.01	0.02	0.01	563.1	0.59	0.62

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2003_07
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

Explain scores - Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Top