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EVA summary for category threading, best of first 1 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 959 394 method/index.html
3D-PSSM   665300method/3dpssm.html
BLAST   822354method/blast.html
FUGUE   768323method/fugue.html
Libellula   305146method/libellula.html
PSI-BLAST   839359method/psiblast.html
SAMt99   263166method/samt99.html
ssearch   827353method/ssearch.html
Superfamily   456200method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 13513D-PSSM15
5.0
(+/-0.7)		10
3.0
(+/-0.2)		10
-2.6
(+/-2.4)		22
5.0
(+/-1.8)		25.6
(+/-4.9)		32.9
(+/-5.3)
BLAST4
2.1
(+/-0.4)		3
2.0
(+/-0.2)		3
-14.8
(+/-2.4)		8
-2.5
(+/-1.6)		13.3
(+/-3.3)		19.0
(+/-3.8)
FUGUE19
6.5
(+/-0.8)		14
3.2
(+/-0.2)		12
-1.1
(+/-2.5)		23
8.2
(+/-2.2)		32.6
(+/-5.0)		41.5
(+/-5.7)
Libellula10
4.5
(+/-0.8)		7
1.8
(+/-0.3)		11
-4.0
(+/-2.5)		20
2.3
(+/-1.8)		20.0
(+/-4.2)		27.3
(+/-4.6)
PSI-BLAST6
2.5
(+/-0.5)		5
2.0
(+/-0.2)		5
-13.4
(+/-3.1)		8
-3.7
(+/-1.8)		12.9
(+/-3.3)		17.9
(+/-3.6)
SAMt9919
6.1
(+/-0.8)		15
3.2
(+/-0.2)		11
-5.6
(+/-3.0)		20
4.7
(+/-2.2)		33.1
(+/-4.8)		41.4
(+/-5.1)
ssearch6
2.9
(+/-0.5)		4
2.7
(+/-0.2)		9
-2.6
(+/-2.0)		14
2.1
(+/-1.9)		14.5
(+/-4.3)		20.2
(+/-4.8)
Superfamily14
4.6
(+/-0.8)		11
2.8
(+/-0.2)		7
-9.8
(+/-3.1)		16
2.1
(+/-2.1)		28.7
(+/-4.7)		35.2
(+/-4.9)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 233313D-PSSM89
4.1
(+/-0.2)		40
2.4
(+/-0.1)		59
-5.0
(+/-0.6)		135
1.3
(+/-0.6)		15.7
(+/-1.3)		23.4
(+/-1.5)
BLAST31
1.9
(+/-0.1)		18
1.8
(+/-0.1)		30
-14.2
(+/-0.7)		58
-3.4
(+/-0.4)		10.9
(+/-1.1)		15.5
(+/-1.2)
FUGUE93
4.2
(+/-0.3)		62
2.6
(+/-0.1)		56
-4.4
(+/-0.6)		137
2.1
(+/-0.6)		16.6
(+/-1.4)		23.6
(+/-1.6)
PSI-BLAST34
2.0
(+/-0.1)		20
1.8
(+/-0.1)		24
-15.4
(+/-0.8)		56
-3.6
(+/-0.5)		10.0
(+/-1.0)		14.9
(+/-1.1)
ssearch39
2.5
(+/-0.2)		30
2.2
(+/-0.1)		49
-5.1
(+/-0.5)		92
-0.3
(+/-0.5)		11.8
(+/-1.3)		17.0
(+/-1.5)
Superfamily63
2.8
(+/-0.2)		34
2.0
(+/-0.1)		31
-13.7
(+/-0.8)		89
-1.9
(+/-0.5)		15.0
(+/-1.2)		20.4
(+/-1.4)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 352713D-PSSM158
4.3
(+/-0.2)		78
2.5
(+/-0.0)		104
-4.2
(+/-0.5)		221
1.9
(+/-0.4)		16.7
(+/-1.1)		24.5
(+/-1.2)
BLAST42
1.8
(+/-0.1)		24
1.8
(+/-0.0)		43
-14.3
(+/-0.6)		82
-3.2
(+/-0.4)		9.8
(+/-0.8)		14.2
(+/-0.9)
FUGUE149
4.2
(+/-0.2)		103
2.6
(+/-0.0)		99
-4.3
(+/-0.5)		216
2.2
(+/-0.5)		16.1
(+/-1.1)		22.8
(+/-1.3)
PSI-BLAST62
2.2
(+/-0.1)		41
1.8
(+/-0.0)		44
-15.1
(+/-0.6)		93
-3.2
(+/-0.4)		10.7
(+/-0.8)		15.4
(+/-0.9)
ssearch66
2.5
(+/-0.1)		50
2.2
(+/-0.0)		75
-4.7
(+/-0.4)		143
-0.2
(+/-0.4)		11.5
(+/-1.0)		16.3
(+/-1.2)

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